

@877

14 years 
Markus Ringnér 
This revision breaks the vector_test. I know this is against the rules …



@876

14 years 
Jari Häkkinen 
Added missing #include <cassert>



@875

14 years 
Peter 
rewriting SW algo, making code clearer, and perhaps removing a few bugs...?



@874

14 years 
Markus Ringnér 
Fixes ticket:237



@873

14 years 
Peter 
fixing some docs



@872

14 years 
Peter 
Some docs for TypeInfo?



@871

14 years 
Peter 
minor docs fix



@869

14 years 
Peter 
Adding SmithWaterman local alignment and modified ssearch to use this …



@868

14 years 
Peter 
fixes ticket:236



@867

14 years 
Peter 
adding function doing a SSEARCH between two strings



@866

14 years 
Markus Ringnér 
refs #236. EnsembleBuilder::predict bug fixed for matrixbased …



@865

14 years 
Peter 
changing URL to http://trac.thep.lu.se/trac/yat



@863

14 years 
Markus Ringnér 
Fixed bug in FeatureSelectorIR that resulted in incorrect results!.



@862

14 years 
Markus Ringnér 
Fixed bug in InputRanker? that sometimes gave rise to a bus error …



@861

14 years 
Peter 
adding class to store and compare std::type_info



@860

14 years 
Peter 
fixes #149  Target constructor from Target and vector<string>



@859

14 years 
Peter 
updated copyright



@858

14 years 
Peter 
refs #148 in EnsembleBuilder?



@857

14 years 
Peter 
refs #148 in NCC



@856

14 years 
Markus Ringnér 
The SNR score is now ok again and renamed SNRScore. Fixes #235"



@852

14 years 
Jari Häkkinen 
Fixes #228.



@851

14 years 
Jari Häkkinen 
Fixes #229.



@848

14 years 
Jari Häkkinen 
Merged log:/branches/0.3.1#838:846 to trunk.



@842

14 years 
Peter 
fixed typo in error msg



@837

14 years 
Peter 
Fixed include to be correct also when being casesensitive. refs #220 …



@833

15 years 
Jari Häkkinen 
Addresses #217. Fixed so that 'make distcheck' compiles but tests fail …



@832

15 years 
Peter 
Refs #217 cleaning up makefile.am



@831

15 years 
Peter 
Refs #185.



@830

15 years 
Jari Häkkinen 
Fixes #206.



@829

15 years 
Jari Häkkinen 
Fixes #173.



@828

15 years 
Peter 
Generalized ConsenusInputRanker?, Fixes #151



@827

15 years 
Peter 
added Functors to be used in CIR. Refs #151



@826

15 years 
Peter 
documentation and some minor fixes Fixes #135



@825

15 years 
Peter 
removed minmax functions and moved shuffle into vector.*



@823

15 years 
Peter 
BootstrapSampler?. Fixes #134



@822

15 years 
Peter 
redesigned tTest fixes #212 and #156



@821

15 years 
Peter 
Modified ROC class to use AUC class in calculation of ROC area. Refs #101



@820

15 years 
Peter 
Changed name again. ROCScore is now called AUC. Also fixed several …



@818

15 years 
Peter 
It depends on the use case here, but I think I agree so hist_ is no …



@817

15 years 
Peter 
Fixes #143



@815

15 years 
Peter 
added constructor for DataLookup1D from a utility::vector



@813

15 years 
Peter 
Predict in NBC. Fixes #57



@812

15 years 
Peter 
implemented NBC predict. Have to check what happens in the weighted …



@811

15 years 
Peter 
dox



@810

15 years 
Jari Häkkinen 
Changed to obey the general wisdom: If you write the same code snipet …



@809

15 years 
Jari Häkkinen 
Fixed spelling.



@808

15 years 
Peter 
previous argument was invalid, but here is an implementation. Fixes #205



@805

15 years 
Peter 
removed Option and Commandline. Not mature enough for a release. …



@803

15 years 
Peter 
removed Microarray namespce and its conents



@798

15 years 
Jari Häkkinen 
Removed unnecessary #include. Added tests for random number distributions.



@797

15 years 
Jari Häkkinen 
Fixes #191. This is the best that can be done with the current design.



@796

15 years 
Jari Häkkinen 
Fixes #201.



@794

15 years 
Peter 
making yat compile



@792

15 years 
Jari Häkkinen 
Addresses #193. matrix now works as outlined in the ticket
discussion. …



@791

15 years 
Jari Häkkinen 
Addresses #193. Added missing implementations.



@790

15 years 
Jari Häkkinen 
Addresses #193. Fixing doxygen docs, and operator=.



@789

15 years 
Jari Häkkinen 
Addresses #193. vector now works as outlined here. Added some …



@788

15 years 
Jari Häkkinen 
Improved comparison operator and equal function doxygen doc. Added for …



@787

15 years 
Peter 
removed v_const in vector since it never used for anything but only …



@785

15 years 
Peter 
I think it is clearer if gsl_vector_const_view is declared as const …



@784

15 years 
Jari Häkkinen 
References #155. Removed potential null pointer usage. Some unwanted …



@783

15 years 
Jari Häkkinen 
Fixes #155. Added asserts to check vectors in all nonconst functions …



@782

15 years 
Jari Häkkinen 
Fixes #195.



@781

15 years 
Peter 
changing name to ROCScore and also added some cassert includes



@780

15 years 
Jari Häkkinen 
Fixed exception message.



@779

15 years 
Peter 
Refs #101



@778

15 years 
Peter 
added ROCscore class. refs #101



@777

15 years 
Peter 
Changed Fisher interface dramatically. No longer inherited from Score. …



@776

15 years 
Jari Häkkinen 
Fixed typos.



@775

15 years 
Jari Häkkinen 
Fixes #200.



@774

15 years 
Jari Häkkinen 
Fixes #194.



@773

15 years 
Jari Häkkinen 
Fixes #138. Removed add, sub, scale and added appropriate operators.



@772

15 years 
Peter 
fixes #126 and added some functions in AveragerPair? and …



@768

15 years 
Peter 
addresses #57



@767

15 years 
Peter 
Fixes #65



@766

15 years 
Peter 
added constructing view from utility::vector



@762

15 years 
Jari Häkkinen 
Fixes #76. Creating/recreating BLAS support matrix only when needed.



@761

15 years 
Jari Häkkinen 
Fixes #7.



@760

15 years 
Peter 
throw exception when detecting invalid 2x2 table. Fixes #26



@759

15 years 
Jari Häkkinen 
Fixes #171 and addresses #2. A few more GSL_error exceptions. Removed …



@758

15 years 
Jari Häkkinen 
Fixes #2. Finalized adding GSL_error exceptions.



@757

15 years 
Jari Häkkinen 
Fixed #include statemenst and forward declarations. asserts in headers …



@756

15 years 
Jari Häkkinen 
Added missing #include



@755

15 years 
Jari Häkkinen 
Addresses #2 and #65. Continued adding GSL_error exceptions, and added …



@754

15 years 
Jari Häkkinen 
Addresses #2 and #65. Continued adding GSL_error exceptions, and added …



@753

15 years 
Jari Häkkinen 
Addresses #2. Continued adding GSL_error exceptions.



@752

15 years 
Jari Häkkinen 
Moving a function implementation from .h to .cc.



@751

15 years 
Jari Häkkinen 
Addresses #2. Continued adding GSL_error exceptions.



@750

15 years 
Jari Häkkinen 
Addresses #2. Continued adding GSL_error exceptions.



@749

15 years 
Peter 
fixes #72



@748

15 years 
Peter 
documentation for SNR improved. fixes #123



@747

15 years 
Peter 
replaced includes in header files with forward declarations when …



@746

15 years 
Peter 
Fixes #146



@745

15 years 
Peter 
fixes #154



@743

15 years 
Peter 
Changed function to return reference to member variable string. This …



@742

15 years 
Peter 
added test that LinearWeighte? is equal to PolynomialWeighted?(1) fixes #166



@741

15 years 
Peter 
fixes #161 and #164



@740

15 years 
Peter 
added more test in MultiDimWeighted? and moved some stuff to be …



@739

15 years 
Peter 
fixes #178 and removes a bug in MultiDimensional?



@738

15 years 
Jari Häkkinen 
Fixes #8 and #179, addresses #2.


