CAMML: Cell-Typing using Variance Adjusted Mahalanobis Distances with Multi-Labeling

Creates multi-label cell-types for single-cell RNA-sequencing data based on weighted VAM scoring of cell-type specific gene sets. Schiebout, Frost (2022) <https://psb.stanford.edu/psb-online/proceedings/psb22/schiebout.pdf>.

Version: 0.2.1
Depends: R (≥ 3.6.0)
Imports: VAM, Seurat (≥ 4.0.0), MASS, Matrix (≥ 1.3.3), utils, BiocManager, org.Hs.eg.db, org.Mm.eg.db, AnnotationDbi, SeuratObject (≥ 4.0.0), methods, edgeR
Suggests: sctransform (≥ 0.3.2)
Published: 2022-05-17
Author: H. Robert Frost [aut], Courtney Schiebout ORCID iD [aut, cre]
Maintainer: Courtney Schiebout <courtney.t.schiebout.gr at dartmouth.edu>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
Copyright: Dartmouth College
NeedsCompilation: no
CRAN checks: CAMML results

Documentation:

Reference manual: CAMML.pdf
Vignettes: CAMML_FigureVignette
CAMMLQuick
CAMML
ChIMP

Downloads:

Package source: CAMML_0.2.1.tar.gz
Windows binaries: r-devel: CAMML_0.2.1.zip, r-release: CAMML_0.2.1.zip, r-oldrel: CAMML_0.2.1.zip
macOS binaries: r-release (arm64): CAMML_0.2.1.tgz, r-oldrel (arm64): CAMML_0.2.1.tgz, r-release (x86_64): CAMML_0.2.1.tgz, r-oldrel (x86_64): CAMML_0.2.1.tgz
Old sources: CAMML archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=CAMML to link to this page.