yaps: Track Estimation using YAPS (Yet Another Positioning Solver)

Estimate tracks of animals tagged with acoustic transmitters. 'yaps' was introduced in 2017 as a transparent open-source tool to estimate positions of fish (and other aquatic animals) tagged with acoustic transmitters. Based on registrations of acoustic transmitters on hydrophones positioned in a fixed array, 'yaps' enables users to synchronize the collected data (i.e. correcting for drift in the internal clocks of the hydrophones/receivers) and subsequently to estimate tracks of the tagged animals. The paper introducing 'yaps' is available in open access at Baktoft, Gjelland, Økland & Thygesen (2017) <doi:10.1038/s41598-017-14278-z>. Also check out our cookbook with a completely worked through example at Baktoft, Gjelland, Økland, Rehage, Rodemann, Corujo, Viadero & Thygesen (2019) <doi:10.1101/2019.12.16.877688>. Additional tutorials will eventually make their way onto the project website at <https://baktoft.github.io/yaps/>.

Version: 1.2.5
Depends: R (≥ 3.5.0)
Imports: circular, cowplot, data.table, ggplot2, ggrepel, nloptr, plyr, Rcpp, reshape2, splusTimeSeries, stats, tictoc, TMB, viridis, zoo
LinkingTo: Rcpp, TMB, RcppEigen
Suggests: caTools, covr, knitr, rmarkdown, testthat (≥ 2.1.0), vdiffr
Published: 2021-04-13
Author: Henrik Baktoft ORCID iD [cre, aut], Karl Gjelland ORCID iD [aut], Uffe H. Thygesen ORCID iD [aut], Finn Økland ORCID iD [aut]
Maintainer: Henrik Baktoft <hba at aqua.dtu.dk>
BugReports: https://github.com/baktoft/yaps/issues
License: GPL-3
URL: https://github.com/baktoft/yaps, https://baktoft.github.io/yaps/
NeedsCompilation: yes
Citation: yaps citation info
Materials: README NEWS
CRAN checks: yaps results


Reference manual: yaps.pdf
Package source: yaps_1.2.5.tar.gz
Windows binaries: r-devel: yaps_1.2.4.zip, r-devel-UCRT: yaps_1.2.5.zip, r-release: yaps_1.2.5.zip, r-oldrel: yaps_1.2.5.zip
macOS binaries: r-release: yaps_1.2.5.tgz, r-oldrel: yaps_1.2.5.tgz
Old sources: yaps archive


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