st: Shrinkage t Statistic and Correlation-Adjusted t-Score

Implements the "shrinkage t" statistic introduced in Opgen-Rhein and Strimmer (2007) and a shrinkage estimate of the "correlation-adjusted t-score" (CAT score) described in Zuber and Strimmer (2009). It also offers a convenient interface to a number of other regularized t-statistics commonly employed in high-dimensional case-control studies.

Version: 1.2.5
Depends: R (≥ 3.0.2), sda (≥ 1.3.7), fdrtool (≥ 1.2.15), corpcor (≥ 1.6.8)
Imports: graphics, stats
Suggests: limma, samr
Published: 2015-07-08
Author: Rainer Opgen-Rhein, Verena Zuber, and Korbinian Strimmer.
Maintainer: Korbinian Strimmer <strimmerlab at gmail.com>
License: GPL (≥ 3)
URL: http://strimmerlab.org/software/st/
NeedsCompilation: no
Materials: NEWS
CRAN checks: st results

Downloads:

Reference manual: st.pdf
Package source: st_1.2.5.tar.gz
Windows binaries: r-devel: st_1.2.5.zip, r-release: st_1.2.5.zip, r-oldrel: st_1.2.5.zip
OS X Snow Leopard binaries: r-release: st_1.2.5.tgz, r-oldrel: st_1.2.4.tgz
OS X Mavericks binaries: r-release: st_1.2.5.tgz
Old sources: st archive

Reverse dependencies:

Reverse depends: BioMark, MAclinical
Reverse imports: tileHMM