# specr - Statistical Functions for Specification Curve Analyses

## Overview

The goal of specr is to facilitate specification curve analyses (Simonsohn, Simmons & Nelson, 2019; also known as multiverse analyses, see Steegen, Tuerlinckx, Gelman & Vanpaemel, 2016). It can be used to investigate how different (theoretically plausible) analytical choices affect outcome statistics within the universe of one single data set.

It provides functions to setup, run, evaluate, and plot the multiverse of specifications. A simple usage example is provided below. For more information about the various functions and specific use cases, visit the documentation.

There are also some vignettes that exemplify and explain specific aspects and functions of the package:

## Disclaimer

We do see a lot of value in investigating how analytical choices affect a statistical outcome of interest. However, we strongly caution against using `specr` as a tool to somehow arrive at a better estimate. Running a specification curve analysis does not make your findings any more reliable, valid or generalizable than a single analysis. The method is only meant to inform about the effects of analytical choices on results, and not a better way to estimate a correlation or effect.

## Installation

You can install the development version from GitHub with:

``````# install.packages("devtools")
devtools::install_github("masurp/specr")``````

## Simple example

Using `specr` is comparatively simple. The main function is `run_specs()` in which analytical choices are specified as arguments. The function `plot_specs()` can then be used to visualize the results.

``````library(specr)

# Run specs
results <- run_specs(df = example_data,
y = c("y1", "y2"),
x = c("x1", "x2"),
model = c("lm"),
controls = c("c1", "c2"),
subsets = list(group1 = unique(example_data\$group1),
group2 = unique(example_data\$group2)))
# Result frame
#> # A tibble: 6 x 12
#>   x     y     model controls estimate std.error statistic  p.value conf.low
#>   <chr> <chr> <chr> <chr>       <dbl>     <dbl>     <dbl>    <dbl>    <dbl>
#> 1 x1    y1    lm    c1 + c2     4.95      0.525     9.43  3.11e-18    3.92
#> 2 x2    y1    lm    c1 + c2     6.83      0.321    21.3   1.20e-57    6.20
#> 3 x1    y2    lm    c1 + c2    -0.227     0.373    -0.607 5.44e- 1   -0.961
#> 4 x2    y2    lm    c1 + c2     0.985     0.324     3.04  2.62e- 3    0.347
#> 5 x1    y1    lm    c1          5.53      0.794     6.97  2.95e-11    3.96
#> 6 x2    y1    lm    c1          8.07      0.557    14.5   6.90e-35    6.98
#> # … with 3 more variables: conf.high <dbl>, obs <int>, subsets <chr>

# Plot
plot_specs(results, choices = c("x", "y", "controls", "subsets"))``````

## How to cite this package

``````citation("specr")
#>
#> To cite 'specr' in publications use:
#>
#>   Masur, Philipp K. & Scharkow, M. (2019). specr: Statistical functions
#>   for conducting specification curve analyses. Available from
#>   https://github.com/masurp/specr.
#>
#> A BibTeX entry for LaTeX users is
#>
#>   @Misc{,
#>     title = {specr: Statistical functions for conducting specification curve analyses (Version 0.2.0)},
#>     author = {Philipp K. Masur and Michael Scharkow},
#>     year = {2019},
#>     url = {https://github.com/masurp/specr},
#>   }``````

## References

Simonsohn, U., Simmons, J. P., & Nelson, L. D. (2019). Specification Curve: Descriptive and Inferential Statistics for all Plausible Specifications. Available at: https://doi.org/10.2139/ssrn.2694998

Steegen, S., Tuerlinckx, F., Gelman, A., & Vanpaemel, W. (2016). Increasing Transparency Through a Multiverse Analysis. Perspectives on Psychological Science, 11(5), 702-712. https://doi.org/10.1177/1745691616658637