seqinr: Biological Sequences Retrieval and Analysis

Exploratory data analysis and data visualization for biological sequence (DNA and protein) data. Seqinr includes utilities for sequence data management under the ACNUC system described in Gouy, M. et al. (1984) Nucleic Acids Res. 12:121-127 <doi:10.1093/nar/12.1Part1.121>.

Version: 3.4-5
Depends: R (≥ 2.10.0)
Imports: ade4, segmented
Published: 2017-08-01
Author: Delphine Charif [aut], Olivier Clerc [ctb], Carolin Frank [ctb], Jean R. Lobry [aut, cph], Anamaria Necşulea [ctb], Leonor Palmeira [ctb], Simon Penel [cre], Guy Perrière [ctb]
Maintainer: Simon Penel <simon.penel at univ-lyon1.fr>
BugReports: http://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/seqinr-forum
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL: http://seqinr.r-forge.r-project.org/
NeedsCompilation: yes
SystemRequirements: zlib headers and library.
Citation: seqinr citation info
Materials: NEWS
In views: Genetics
CRAN checks: seqinr results

Downloads:

Reference manual: seqinr.pdf
Package source: seqinr_3.4-5.tar.gz
Windows binaries: r-devel: seqinr_3.4-5.zip, r-release: seqinr_3.4-5.zip, r-oldrel: seqinr_3.4-5.zip
OS X El Capitan binaries: r-release: seqinr_3.4-5.tgz
OS X Mavericks binaries: r-oldrel: seqinr_3.4-5.tgz
Old sources: seqinr archive

Reverse dependencies:

Reverse depends: Autoplotprotein, BALCONY, CNOGpro, DCODE, EnsCat, LncFinder, LSPFP, MEET, mlgt, plotprotein, SMM
Reverse imports: adegenet, alakazam, aLFQ, AlignStat, AmyloGram, AnnotationBustR, apmsWAPP, caRpools, CONDOP, cooccurNet, dartR, evobiR, gkmSVM, gquad, hoardeR, MAGNAMWAR, metacoder, prozor, PTXQC, SafeQuant, shazam, signalHsmm, sivipm
Reverse suggests: biomartr, cubfits, phangorn, rnaseqWrapper, SimRAD, TKF, vhica
Reverse enhances: spgs

Linking:

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