refGenome: Gene and Splice Site Annotation Using Annotation Data from Ensembl and UCSC Genome Browsers

Contains functionality for import and managing of downloaded genome annotation Data from Ensembl genome browser (European Bioinformatics Institute) and from UCSC genome browser (University of California, Santa Cruz) and annotation routines for genomic positions and splice site positions.

Version: 1.5.8
Depends: methods, doBy, RSQLite
Imports: DBI
Published: 2015-07-29
Author: Wolfgang Kaisers
Maintainer: Wolfgang Kaisers <kaisers at med.uni-duesseldorf.de>
License: GPL-2
NeedsCompilation: yes
Materials: NEWS ChangeLog
CRAN checks: refGenome results

Downloads:

Reference manual: refGenome.pdf
Vignettes: Introduction
Introduction
Package source: refGenome_1.5.8.tar.gz
Windows binaries: r-devel: refGenome_1.5.8.zip, r-release: refGenome_1.5.8.zip, r-oldrel: refGenome_1.5.8.zip
OS X Snow Leopard binaries: r-release: refGenome_1.3.0.tgz, r-oldrel: refGenome_1.3.0.tgz
OS X Mavericks binaries: r-release: refGenome_1.5.8.tgz
Old sources: refGenome archive