qiimer

The qiimer package provides R functions to read QIIME output files and create figures.

Types of files covered: * "Classic" format OTU tables * Distance matrices * Metadata mapping files * OTU mapping files (OTU ID to sequence ID) * Rarefied alpha diversity tables

Also included: convenience functions for BLAST tables, distance matrix objects, and biom-format OTU tables imported via the biom library.