primerTree: Visually Assessing the Specificity and Informativeness of Primer Pairs

Identifies potential target sequences for a given set of primers and generates phylogenetic trees annotated with the taxonomies of the predicted amplification products.

Version: 1.0.6
Depends: R (≥ 3.5.0), directlabels, gridExtra
Imports: ape, foreach, ggplot2, grid, httr, lubridate, plyr, reshape2, scales, stringr, XML
Published: 2022-04-05
DOI: 10.32614/CRAN.package.primerTree
Author: Jim Hester [aut], Matt Cannon [aut, cre]
Maintainer: Matt Cannon <matthewvc1 at>
License: GPL-2
NeedsCompilation: yes
CRAN checks: primerTree results


Reference manual: primerTree.pdf


Package source: primerTree_1.0.6.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): primerTree_1.0.6.tgz, r-oldrel (arm64): primerTree_1.0.6.tgz, r-release (x86_64): primerTree_1.0.6.tgz, r-oldrel (x86_64): primerTree_1.0.6.tgz
Old sources: primerTree archive


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