[aut, cre, cph],
Thibaut Jombart
[aut, cph],
Zhian N. Kamvar
[aut, cph],
Brian Knaus [aut,
cph],
Klaus Schliep
[aut, cph],
Alastair Potts
[aut, cph],
David Winter
[aut, cph]Functions for reading, writing, plotting, analysing, and manipulating allelic and haplotypic data, including from VCF files, and for the analysis of population nucleotide sequences and micro-satellites including coalescent analyses, linkage disequilibrium, population structure (Fst, Amova) and equilibrium (HWE), haplotype networks, minimum spanning tree and network, and median-joining networks.
| Version: | 1.0 |
| Depends: | R (≥ 3.2.0), ape (≥ 5.3-11) |
| Imports: | graphics, utils, methods, adegenet |
| Suggests: | rgl, snpStats |
| Published: | 2021-04-08 |
| Author: | Emmanuel Paradis
[aut, cre, cph],
Thibaut Jombart
[aut, cph],
Zhian N. Kamvar
[aut, cph],
Brian Knaus [aut,
cph],
Klaus Schliep
[aut, cph],
Alastair Potts
[aut, cph],
David Winter
[aut, cph] |
| Maintainer: | Emmanuel Paradis <Emmanuel.Paradis at ird.fr> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| URL: | http://ape-package.ird.fr/pegas.html |
| NeedsCompilation: | yes |
| Citation: | pegas citation info |
| Materials: | NEWS |
| In views: | Phylogenetics |
| CRAN checks: | pegas results |
| Reference manual: | pegas.pdf |
| Vignettes: |
Plotting Haplotype Networks Reading Files |
| Package source: | pegas_1.0.tar.gz |
| Windows binaries: | r-devel: pegas_1.0.zip, r-devel-UCRT: pegas_1.0.zip, r-release: pegas_1.0.zip, r-oldrel: pegas_0.14.zip |
| macOS binaries: | r-release: pegas_1.0.tgz, r-oldrel: pegas_0.14.tgz |
| Old sources: | pegas archive |
| Reverse depends: | adhoc, StAMPP |
| Reverse imports: | graph4lg, HACSim, HierDpart, mmod, PopGenReport, poppr, RAINBOWR, spider |
| Reverse suggests: | adegenet, dartR, hierfstat, pagoo |
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