haplotyper: Tool for Clustering Genotypes in Haplotypes

Function to identify haplotypes within QTL (Quantitative Trait Loci). One haplotype is a combination of SNP (Single Nucleotide Polymorphisms) within the QTL. This function groups together all individuals of a population with the same haplotype. Each group contains individual with the same allele in each SNP, whether or not missing data. Thus, haplotyper groups individuals, that to be imputed, have a non-zero probability of having the same alleles in the entire sequence of SNP's. Moreover, haplotyper calculates such probability from relative frequencies.

Version: 0.1
Depends: R (≥ 2.10)
Imports: graphics, utils
Suggests: knitr, rmarkdown, testthat
Published: 2016-04-06
Author: Sebastian Simondi and Gaston Quero, with contributions from Victoria Bonnecarrere and Lucia Gutierrez
Maintainer: Gaston Quero <gastonquero at gmail.com>
License: GPL-3
NeedsCompilation: no
CRAN checks: haplotyper results

Downloads:

Reference manual: haplotyper.pdf
Vignettes: Use haplotyper
Package source: haplotyper_0.1.tar.gz
Windows binaries: r-devel: haplotyper_0.1.zip, r-devel-gcc8: haplotyper_0.1.zip, r-release: haplotyper_0.1.zip, r-oldrel: haplotyper_0.1.zip
OS X binaries: r-release: haplotyper_0.1.tgz, r-oldrel: haplotyper_0.1.tgz

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