genBaRcode: Analysis and Visualization Tools for Genetic Barcode Data

Provides the necessary functions to identify and extract a selection of already available barcode constructs (Cornils, K. et al. (2014) <doi:10.1093/nar/gku081>) and freely choosable barcode designs from next generation sequence (NGS) data. Furthermore, it offers the possibility to account for sequence errors, the calculation of barcode similarities and provides a variety of visualisation tools (Thielecke, L. et al. (2017) <doi:10.1038/srep43249>).

Version: 1.2.4
Depends: R (≥ 3.4)
Imports: methods, RColorBrewer, ape, ggnetwork, ggplot2, ggraph, igraph, network, phangorn, stringdist, visNetwork, reshape2, S4Vectors, shiny, ggseqlogo, ggtree, dplyr, VennDiagram, futile.logger, future, future.apply, tools, ShortRead, Biostrings
Suggests: BiocManager, testthat, knitr, rmarkdown
Published: 2020-12-02
Author: Lars Thielecke
Maintainer: Lars Thielecke <lars.thielecke at tu-dresden.de>
License: LGPL-2 | LGPL-2.1 | LGPL-3 [expanded from: LGPL]
NeedsCompilation: no
CRAN checks: genBaRcode results

Downloads:

Reference manual: genBaRcode.pdf
Vignettes: Introduction to the genBaRcode GUI
Introduction to genBaRcode
Package source: genBaRcode_1.2.4.tar.gz
Windows binaries: r-devel: genBaRcode_1.2.3.zip, r-release: genBaRcode_1.2.3.zip, r-oldrel: genBaRcode_1.2.3.zip
macOS binaries: r-release: not available, r-oldrel: not available
Old sources: genBaRcode archive

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