NEWS ================ and #> Last Update: 2019-03-14 13:46:17 # baytrends 1.1.0 - Release 2019-03-14 - Release update for CRAN - As minor upgrade. # baytrends 1.0.8 - Release 2019-03-14 - Release update for CRAN - As bug fix. # baytrends 1.0.7.9011 - Release 2019-03-14 - Fix date in DESCRIPTION. - Add library creation notebook to .Rbuildignore # baytrends 1.0.7.9010 - Release 2019-03-13 - Updates based on “check” to prepare for submittal to CRAN. - Added some oxygen tags - Added .install\_extras to vignettes folder for additional PDF docs - “dot” prefix functions with keyword internal - Removed example for hidden function .createResiduals - .findFile examples marked as do not run. # baytrends 1.0.7.9009 - Release 2019-03-11 - Update from devtools::session\_info to sessioninfo::session\_info. Issue \#31. - closeOut function. - Rebuild vignettes. - Names not showing in help file. # baytrends 1.0.7.9008 - Release 2019-03-05 - seasMeandoy.xyz removed from prediction data set # baytrends 1.0.7.9007 - Release 2018-12-28 - Based on date range entered into analySpec\_gamLegend\_legend for analySpec\_gamLegend\_descrip equal to ‘seasMean’, compute predicted values based on doy’s spread across above date range. seasMeandoy.xyz maintained in prediction data set along with seasMeanMin, seasMeanMean, and seasMeanMax. # baytrends 1.0.7.9006 - Release 2018-08-08 - created loadModelsResid function to include models for calculating residuals (i.e., primarily gam4 and gam5 without cyear) - updated createResidual to save plots to file # baytrends 1.0.7.9005 - Release 2018-08-03 - updated createResidual to skip over cases (i.e., specific stations) where there were insufficient data to run specified gam formula # baytrends 1.0.7.9004 - Release 2018-08-01 - added loadModels function to facilitate gam formula specification; updated createResidual to include a “fall back” option to use gam2 or gam4 if user had selected gam3 or gam5 and the model did not run (expected due to intervention) # baytrends 1.0.7.9003 - Release 2018-07-30 - function deSeasonalize renamed to createResiduals; extended to allow for any gam0-gam5 model # baytrends 1.0.7.9002 - Release 2018-07-18 - update function deSeasonalize to allow for s(doy) and perform basic testing # baytrends 1.0.7.9001 - Release 2018-07-13 - added function deSeasonalize # baytrends 1.0.7 - Release 2018-07-12 - Resubmit to CRAN # baytrends 1.0.6.9001 - Release 2018-07-12 - DESCRIPTION - Additional\_repositories to URL - Update and lengthen Description. # baytrends 1.0.6 - Release 2018-07-09 - # Resubmit to CRAN # baytrends 1.0.5.9002 - Release 2018-07-11 - Update ANOVA table to allow for no parametric terms in gam formula # baytrends 1.0.5.9001 - Release 2018-07-09 - Fix CRAN submission NOTES - Restructure my names with middle initial as maintainer. - donotrun on examples for detrended.flow and detrended.salinity # baytrends 1.0.5 - Released 2018-07-06 - Create “release” on GitHub. - Submit to CRAN # baytrends 1.0.4.9012 - Released 2018-07-06 - selectData - Remove example. - CHECK - 0 errors | 0 warnings | 0 notes # baytrends 1.0.4.9011 - Released 2018-07-06 - DESCRIPTION - Change “maintainer” from Jon Harcum to Erik Leppo so Erik can submit to CRAN. - Change “additional repositories” to GitHub. Was . - .Rbuildignore - Add cran-comments.md - qw.import; example qw.names - Rename variables without “f”; po4, no23, and nh4 - Remove variables pp and pn. - detrended.flow - Fix CHECK NOTE for figNum. - Added “figNum” to globalVariables in zzz.R - Assigned figNum as NULL before assign as zero. - dataCensored - Fix CHECK WARNING - selectData - Example not working. Mark as “donotrun” while troubleshoot. # baytrends 1.0.4.9010 - Released 2018-07-05 - Add .github to .Rbuildignore to avoid CHECK note. - Added dates to NEWS releases. - Update data.R for dataCensored. # baytrends 1.0.4.9009 - Released 2018-07-03 - dataCensored: aligned data set with companion journal article # baytrends 1.0.4.9008 - Released 2018-07-03 - dataCensored: aligned data set with companion journal article # baytrends 1.0.4.9007 - Released 2018-07-02 - selectData: improved error trap for lack of data # baytrends 1.0.4.9006 - Released 2018-6-12 - updated documentation # baytrends 1.0.4.9005 - Released 2018-6-12 - Added baytrends version to to iSpec and improved readme file # baytrends 1.0.4.9004 - Released 2018-6-12 - Added list of seasonal models to iSpec # baytrends 1.0.4.9003 - Released 2018-6-12 - Updated impute function to include maximum likelihood estimation assuming normal and lognormal distribution # baytrends 1.0.4.9002 - Released 2018-6-12 - Updated NEWS and DESCRIPTION. - Updated online documentation for analysisOrganizeData function - pass parameterList from gamTest to .chkParameter # baytrends 1.0.4.9001 - Released 2018-6-12 - Updated NEWS and DESCRIPTION. - Updated online documentation for analysisOrganizeData function - pass parameterList from gamTest to .chkParameter # baytrends 1.0.4 - Released 2018-05-14 - Created release 1.0.4 on GitHub # baytrends 1.0.3.9021 - Released 2018-05-14 - Updated NEWS and DESCRIPTION. - Check results: no errors, warnings, or notes. # baytrends 1.0.3.9020 - Released 2018-05-13 - GitHub commit; Merge pull request \#16 from tetratech/12Mar2018 # baytrends 1.0.3.9019 - Released 2018-05-13 - GitHub commit; v1.0.3.9011 - missed layerLukup -\> layerList naming convention # baytrends 1.0.3.9019 - Released 2018-05-12 - GitHub commit; Merge pull request \#15 from tetratech/12Mar2018 # baytrends 1.0.3.9018 - Released 2018-05-12 - GitHub commit; v1.0.4 # baytrends 1.0.3.9017 - Released 2018-05-12 - GitHub commit; v1.0.4 # baytrends 1.0.3.9016 - Released 2018-05-12 - GitHub commit; v1.0.4 - Added passing of salinity.detrended and flow.detrended to gamTest - Added passing stationMasterList, parameterList, and layerLukup to analyzeOrganizeData - Corrected getUSGSflow function to accomodate missing values at beginning/ending of record - Moved package `plyr` from Suggests to Imports in DESCRIPTION - Remaining Check issue with no visible binding for global variable; salinity.detrended - .gamPlotCalc - .mergeSalinity - gamDiff # baytrends 1.0.3.9015 - Released 2018-05-12 - GitHub commit; Merge pull request \#14 from tetratech/detrended\_files - Detrended files # baytrends 1.0.3.9014 - Released 2018-05-12 - GitHub commit; v1.0.3.9009 - Set data frames for station and layer list to not use factors # baytrends 1.0.3.9013 - Released 2018-05-12 - GitHub commit; v1.0.3.9009 - Further clean up for handling detrended files. # baytrends 1.0.3.9012 - Released 2018-05-12 - GitHub commit; v1.0.3.9009 - Migrate gamDiff for detrended flow and salinity. # baytrends 1.0.3.9011 - Released 2018-05-12 - GitHub commit; v1.0.3.9008 - analysisOrganizeData: add parameterList, stationMasterList, and layerLukup to argument list. If not passed then default baytrend data frames are used. added parmRecensor to depVarList, added usgsGageName to stationList - selectData: migrated from using stationMasterList, parameterList to stationList and depVarList. - gamTest: added salinity.detrended to argument list, updated conditionals used to skip flw\_sal models, embedded explicit passing of flow.detrended and salinity.detrended to mergeFlow and mergeSalinity. # baytrends 1.0.3.9010 - Released 2018-05-12 - GitHub commit; documentation typographical error correction # baytrends 1.0.3.9009 - Released 2018-05-11 - GitHub commit; Merge pull request \#11 from tetratech/fix\_flow\_retrieval # baytrends 1.0.3.9008 - Released 2018-05-11 - GitHub commit; v1.0.3.9005 - updated getUSGSflow function to fill in missing flow values at the beginning and ending of time series. # baytrends 1.0.3.9007 - Released 2018-05-11 - GitHub commit; Merge pull request \#10 from tetratech/fix\_flow\_retrieval # baytrends 1.0.3.9006 - Released 2018-05-011 - GitHub commit; v1.0.3.9005 - updated getUSGSflow function to fill in missing flow values at the beginning and ending of time series. # baytrends 1.0.3.9005 - Released 2018-05-09 - GitHub commit; Merge pull request \#8 from tetratech/harcum\_development # baytrends 1.0.3.9004 - Released 2018-05-09 - GitHub commit; v1.0.3.9004 # baytrends 1.0.3.9003 - Released 2018-05-07 - GitHub commit; v1.0.3.9003 - Last fix for Check. Ready for sumittal to CRAN. Issue \#1 # baytrends 1.0.3.9002 - Released 2018-05-07 - GitHub commit; v1.0.3.9002 - Verified merge of DEV branch into Master. - Fixed an issue with plyr and - Re-ran Check to get ready for CRAN submittal (Issue \#1 ). # baytrends 1.0.3.9001 - Released 2018-05-07 - Merge Development Branch (v.0.2.9012 DEV) with master branch. - Resolve conflicts: - DESCRIPTION - NAMESPACE - NEWS (left alone as will rebuild) - NEWS.rmd - mergeFlow.R - baytrends\_LibraryCration.nb.html (left alone as will rebuild) # baytrends 1.0.2.9012, development branch - Released - 2018-05-03 - branch of master based on v1.0.2 (release) - Clean up from check for CRAN - Note; NEWS.rmd. Add to git.ignore and .Rbuildignore - Error; sensAdjflow2.R “figNum”. Add QC check to ensure is defined. - Warning; undocumented dataset; added param and default to mergeFlow, gamTest, gamPlotCalc, and gamDiff. Also added to data.R (was missing). - Note; Namespace, importFrom. - importFrom(“stats”, “BIC”, “StructTS”, “aggregate”, “approx”, “cov2cor”, “dnorm”, “filter”, “fitted”, “hat”, “integrate”, “logLik”, “lowess”, “lsfit”, “na.omit”, “na.pass”, “naresid”, “pchisq”, “ppoints”, “qf”, “residuals”, “sd”, “tsSmooth”, “update”, “var”) - importFrom(“utils”, “flush.console”, “getS3method”, “modifyList”, “read.table”, “strOptions”, “write.table”) - Added QC to define figNum. - Copied from seasAdjflow2.R to detrended.flow.R and detrended.salinity.R - Add functions from swmwr packages: - smwrBase; %cn%, group2row, isDateLike - smwrQW; mcenKM, mcenMLE, mcenROS, mdlMLE, mdlROS, pcodeNWISqw - smwrStats; rmse, vif - Adding the above led to others that needed to be added: - smwrGraphs; refLine, xyPlot - smwrBase; importRDB - Addition of xyPlot required more functions: - smwrGraphs; setPlot, linearPretty, setPage, timePlot, colorPlot - Remove cross references in “seealso” for some of the imported smwr functions. - importRDB, isLike, linearPretty, refLinem, setPage, setplot, timePlot, cn - importFrom needed for 3 more packages in the newest smwr functions that were added. - importFrom(“grDevices”, “Type1Font”, “dev.cur”, “extendrange”, “gray”, “pdfFonts”, “rainbow”) - importFrom(“graphics”, “box”, “segments”, “strwidth”) - importFrom(“stats”, “cov.wt”, “dist”, “model.matrix”) - Add more smwr package functions: - Base; dectime, dectime2Date - Graphs; datePretty, namePretty, numericData, setColor, setGD, setMargin , setMultiPlot, timePretty - Fix links in most recently added functions; comment out seealso. - datePretty, dectime, namePretty, setColor, setMargin, setMultiPlot - Add importFrom; grDevices colors - Add function from smwr packages; - smwrGraphs; month.USGS, renderPretty, setExplan, transData, linewt (framewt) - Add importFrom for the newly added functions. - importFrom(“grDevices”, “col2rgb”, “rgb”) - importFrom(“graphics”, “axis”) - Add function from smwr packages; - smwrGraphs; addCaption - Fix “assign” to global environment in smwrGraphs\_setPage.R - Line 180, comment out. Is setting to NULL as a precaution but function isn’t used by baytrends. - Data with “no visible bindig for global variable” error. - Add a line at the beginning of each affected function to reference the data; baytrends::xyz. - Peter Dalgaard’s proposed solution, 2014-Aug - - .chkParameter; parameterList - analysisOrganizeData; parameterList, stationMasterList, layerLukup - selectData; stationMasterList, parameterList, layerLukup - gamDiff, bad usage of stat. Undefined. Line 193. - Change to iSpec$stat - Remaining issues: - .gamPlotCalc; salinity.detrended - .mergeSalinity; salinity.detrended - gamDiff; salinity.detrended # baytrends 1.0.2.9011 - Released - 2018-05-02 - v1.0.2.9002 - add standard error to stat.gam.result and chng.gam.result output - add USGS gage ID and name to stat.gam.result and chng.gam.result output - add mgcvOK to stat.gam.result and chng.gam.result output to indicate if mgcv::gam ran ok - removed median as option for summarizing data across layers - expose impute function for simple substitution (0, 1/2dl, dl) conversion of qw data to vector - added error handling to trap mgcv::gam non-convergence errors \======= baytrends 1.0.3 =========== \* Released - 2018-05-03 \* Release version # baytrends 1.0.2.9013 - Released - 2018-05-03 - Fix lubridate and plyr conflict. Issue \#6. - gamTest change import lubridate mgcv plyr to importFrom for lubridate mdy and plyr rbind.fill. # baytrends 1.0.2.9012 - Released - 2018-05-03 - Update versioning in NEWS and DESCRIPTION # baytrends 1.0.2.9011 - Released - 2018-05-02 - v1.0.2.9002 in DESCRIPTION - v1.0.3.0000 in NEWS - Updates: - add standard error to stat.gam.result and chng.gam.result output - add USGS gage ID and name to stat.gam.result and chng.gam.result output - add mgcvOK to stat.gam.result and chng.gam.result output to indicate if mgcv::gam ran ok - removed median as option for summarizing data across layers - expose impute function for simple substitution (0, 1/2dl, dl) conversion of qw data to vector - added error handling to trap mgcv::gam non-convergence errors # baytrends 1.0.2.9010 - Released - 2018-05-02 - v1.0.2.9002 - add intervention label to GAM Parameter Coefficient table. # baytrends 1.0.2.9009 - Released - 2018-05-02 - v1.0.2.9002 - Added error trapping to address non-convergence of mgcv::gam # baytrends 1.0.2.9007 - Released - 2018-05-01 - Merge branch ‘master’ of # baytrends 1.0.2.9006 - Released - 2018-05-01 - corrected storage of usgs codes # baytrends 1.0.2.9005 - Released - 2018-05-01 - documentation updates # baytrends 1.0.2.9004 - Released - 2018-05-01 - documentation updates # baytrends 1.0.2.9004 - Released - 2018-05-01 - documentation updates # baytrends 1.0.2.9003 - Released - 2018-05-01 - only allow ‘mean’ for computing layer aggregation. # baytrends 1.0.2.9002 - Released - 2018-05-01 - added usgs gage id, usgs gage name, and gam diff standard error to to stat.gam.result and chng.gam.result output data sets # baytrends 1.0.2.9001 - Released - 2018-05-01 - exposed impute function; updated impute function to focus on simple substitution # baytrends 1.0.2.0000 - Released - 2018-03-26 - Release version # baytrends 1.0.1.9015 - Released - 2018-03-26 - Function Updates - detrended.flow - detrended.salinity - Update detrended vignette for changes in functions. - Updates from “check”. # baytrends 1.0.1.9014 - Released - 2018-03-26 - Update vignettes - /docs/baytrends\_overview.pdf - /vignettes/vignette\_qw.Rmd - New vignette - /vignettes/create\_Seasonally\_Detrended\_Flow\_and\_Salinity\_Data\_Sets.Rmd - Update detrended.salinity.R for changes in names in “sal” data. # baytrends 1.0.1.9013 - Released - 2018-03-26 - salinity data. - \_GenerateData\_sal.R - sal.rda - data.R # baytrends 1.0.1.9012 - Released - 2018-03-21 - Add baytrends\_overview.pdf to “doc” as vignette. # baytrends 1.0.1.9011 - Released - 2018-03-21 - Add detrended.salinity function. - Includes revised (smaller) data set (sal) for use with function. - Updated data.R for “sal” data. # baytrends 1.0.1.9010 - Released - 2018-03-21 - Add detrended.flow function. - Add helper functions as internal functions. - Remove detrended flow and salinity data files and vignettes from package. # baytrends 1.0.1.9009 - Released - 2018-03-20 - Update internal functions. - mdlKM – hide - flwAveragePred – hide - qw.export – make visible - as.qw-method – hide - qw-class – hide # baytrends 1.0.1.9008 - Released - 2018-03-19 - Update documentation. - Vignette - data.R - baytrends.R - Code edit in SelectData.R. # baytrends 1.0.1.9007 - Released - 2018-03-16 - Fixes from “check” - data.R - file size - dlimit and censorLevels from smwrQW - strip.blanks from smwrGraphs # baytrends 1.0.1.9006 - Released - 2018-03-14 - Update qw vignette. # baytrends 1.0.1.9005 - Released - 2018-03-14 - Tweak qw.export and qw.import functions and vignette. # baytrends 1.0.1.9004 - Released - 2018-03-02 - Tweak qw.export Rounding export. - QW object import internal function, qw.import. - QW object vignette. # baytrends 1.0.1.9003 - Released - 2018-03-01 - QW object export internal function, qw.export. # baytrends 1.0.1.9002 - Released - 2018-02-28 - More clean up of linked ‘see also’ references in smwr functions. - Add help file for package name, baytrends.R. - Moved detrended salinity and flow vignettes to extdata. - Rename seasonally detrended data sets (salinity and flow) without special characters. # baytrends 1.0.1.9001 - Released - 2018-02-23 - Clean up after running Check. - Move /data-raw to /inst/data-raw - Document /data in /R/data.R - DESCRIPTION, remove dataRetrieval from Suggests (already under Imports). # baytrends 1.0.1 - Released - 2018-02-16 - Clean up and send out to project users. # baytrends 1.0.0.9002 - Released - 2018-02-15 - Add back censoring.R from smwrQW package as it is needed for qw objects. Was removed in v0.3.3.9016 # baytrends 1.0.0.9001 - Released - 2018-02-05 - Improve error trapp for when to allow baytrends to run an intervention model. - selectData.R - gamTest.R # baytrends 1.0.0 - Released - 2018-02-01 - Set as release on GitHub. # baytrends 0.3.3.9019 - Released - 2018-02-01 - Update vignettes. Remove setwd(). # baytrends 0.3.3.9018 - Released - 2018-02-01 - Updated Vignettes to run with data in vignettes folder. - Added function fillMissing from smwrBase for detrended flow vignette. # baytrends 0.3.3.9017 - Released - 2018-01-31 - Fix errors in Namespace noted in Check. # baytrends 0.3.3.9016 - Released - 2018-01-31 - Remove unneeded functions from smwrQW package. # baytrends 0.3.3.9015 - Released - 2018-01-31 - Created vignettes: - QW object conversion - Detrended flow data - Detrended salinity data - Add and remove funtions from index with keyword internal. # baytrends 0.3.3.9014 - Released - 2018-01-12 - Add more functions, as.x, to keywords internal to remove from help file list. - Add Erik W Leppo as author in DESCRIPTION. # baytrends 0.3.3.9013 - Released - 2018-01-11 - Modified dataCensored to include timezone. Should fluctuate between EST and EDT. - Exported original data file with TZ included with smwrQW present. Then rebuilt dataCensored with smwrQW removed. # baytrends 0.3.3.9012 - Released - 2018-01-05 - Fix files names. OneDrive on development computer introduced duplicate files. Some of older versions. - Hid all smwr\*.R files from help file index with keywords internal. # baytrends 0.3.3.9011 - Released - 2017-12-20 - dataCensored - Clean up “data-raw” folder and GenerateData script. - Overwrite smwrQW dependant dataCensored.rda file with baytrends version. - Remove dataCensored CSV files from . - Move - Rename temporary R scripts from “x\_\*" to “smwrQW\_x\_\*“. - Known files that are needed already have smwrQW prefix. Keep new ones different. # baytrends 0.3.3.9010 - Released - 2017-12-19 - Rebuild with minor edits for smwrQW references in files (Find in Files). - Added smwrQW\_is.na.R. - Edits to \_GenerateData\_dataCensored.R. - qw object creates but still fails when adding to data.frame. - Copy in all smwrQW function not already added. Test if builds. # baytrends 0.3.3.9009 - Released - 2017-12-06 - Added function as.qw from smwrQW. - Modified include from qw-class.R to a1\_smwrQW\_qw-class.R. - Did not add as.lcens or as.mcens as they require other functions in smwrBase and smwrQW. - Added “data-raw” folder. - Created all parts of dataCensored object and saved to “data-raw”. - Added script to build dataCensored. - Renamed back to baytrends on GitHub and in development code. - a1\_smwrQW\_qw-class.R - Comment out “name” - as.qw.R - Comment out “See Also” (refers to function not ported from smwrQW). # baytrends 0.3.3.9008 - Released - 2017-12-05 - Resave dataCensored.rda. Installed smwrQW so could open and resets “qw” class to first reference in namespace (baytrends). Then saved and removed smwr packages. - Add lscens class as well; a2\_smwrQW\_lcens-class.R. - Rename mscens from a2 to a3 to preserve collate order of smwrQW. # baytrends 0.3.3.9007 - Released - 2017-12-05 - Rename new class objects to appear in R folder first. And will load first. - ‘smwrQW\_qw-class.R’ (prefix “a1\_”). - ‘smwrQW\_mcens-class.R’ (prefix “a2\_”). - Need to fix functions and examples that are looking for smwrQW. - analysisOrganizeData - selectData - gamDiff - gamTest # baytrends 0.3.3.9006 - Released - 2017-12-05 - Removed swmr packages from R install. - Rebuild baytrends with smwrBase functions included. - baseDay - baseDay2decimal - Removed import from smwrQW from gamTest. Had import for smwrQW. - Added class objects qw and mcens from smwrQW. - Renamed all added R files with smwrBase\_ or smwrQW\_. # baytrends 0.3.3.9005 - Released - 2017-12-05 - Remove all smwrX packages (Base, Graphs, QW, and Stats). Not just the oprhaned QW and Stats. Base and Graphs DEPEND on QW as well. # baytrends 0.3.3.9004 - Released - 2017-12-04 - Modified NEWS to NEWS.rmd. # baytrends 0.3.3.9003 - Released - 2017-12-04 - Remove “smwrQW” from Depends in DESCRIPTION. - Remove “smwrStats” from Suggests in DESCRIPTION. # baytrends 0.3.3.9002 - Released - 2017-12-04 - Add Notebooks for Library Creation and Testing to . # baytrends 0.3.3.9001 - Released - 2017-12-04 - Renamed to baytrends033 - Test version to GitHub # baytrends 0.3.3 - Released - 11/24/2017 - Updated gamDiff: flow/salinity model to calculate baseline/current mean differences based on average conditions - Updated gamPlotDisp: corrected full model display option # baytrends 0.3.2 - Released - 8/09/2017 - Updated seasonal model to include averaging over season and flow\[salinity\] # baytrends 0.3.1 - Released - 8/6/2017 - Added function loadExcel to facilitate reading user Excel files. Similar functionality to the existing function loadData. - Changed nomenclature from tidalStations to stationMasterList - Enhanced knot specification to allow 2 levels of knots (gamK1 and gamK2). Previously only could specify gamK\_CritSel. Specification of gamK1 and gamK2 now included as part of specifying gamModels - Enhanced to allow for including flow or salinity as an independent variable in gam models, including adding gam4 to default list of gam models evaluated. (**Does** not include updated for computing seasonally averaged/flow\[salinity\] averaged model in this version.) # baytrends 0.2.7 - Released - 7/20/2017 - Enhanced baytrends to output p-values and estimates of change related to laboratory method changes (“interventions”) in a style that compares method “A” to “B”, “B” to “C”, “C” to “D”, etc. rather than “A” to “B”, “A” to “C”, “A” to “D”, etc. # baytrends 0.2.6 - Released - 4/25/2017 - corrected usage of user specified station file # baytrends 0.2.5 - Released - 3/15/2017 - updated loadData to allow for specifying strings indicating null values, see naChar - updated multiple functions to address ‘no visible binding for global variable’ notes - added @importFrom statements for graphics and stat functions # baytrends 0.2.4 - Released - 2/9/2017 - updated seasonal average model algorithm to be independent of mn.doy - added algorithm to compute number of knots in s(cyear) term based on record length - added user ability to set ‘select’ term in mgcv::gam function to TRUE, FALSE, or algorithm selected - added user ability to set expectation maximization convergence threshold - added F-stat evaluation and ANOVA table modification # baytrends 0.2.3 - Released - 11/09/2016 - Documentation updated - Added default settings to for gam formula for intervention testing - Added functionality to trim early data where the level of censoring exceeds desired levels - Added functionality to thin prediction data set to improve speed and reduce the size of the returned results - loadData: added functionality to convert date-like fields to POSIXct format (see argument convDates) - Add error trap for when all data associated with dependent variable are NA # baytrends 0.2.2 - Released - 10/17/2016 - Updated graphics for censored data # baytrends 0.2.1 - Original release - 10/13/2016