allelematch: Identifying Unique Multilocus Genotypes where Genotyping Error and Missing Data may be Present

Tools for the identification of unique of multilocus genotypes when both genotyping error and missing data may be present. The package is targeted at those working with large datasets and databases containing multiple samples of each individual, a situation that is common in conservation genetics, and particularly in non-invasive wildlife sampling applications. Functions explicitly incorporate missing data, and can tolerate allele mismatches created by genotyping error. If you use this tool, please cite the package using the journal article in Molecular Ecology Resources (Galpern et al., 2012). Please use citation('allelematch') to call the full citation. For users with access to the associated journal article, tutorial material is also available as supplementary material to the article describing this software, the citation for which can be called using citation('allelematch').

Version: 2.5.1
Depends: graphics, stats, utils
Imports: dynamicTreeCut
Suggests: R.rsp
Published: 2019-04-15
Author: Paul Galpern [aut], Todd Cross [cre, ctb], Katie Zarn [ctb]
Maintainer: Todd Cross <todd.cross at gmail.com>
License: GPL-3
NeedsCompilation: no
Citation: allelematch citation info
CRAN checks: allelematch results

Downloads:

Reference manual: allelematch.pdf
Vignettes: Identifying Unique Multilocus Genotypes where Genotyping Error and Missing Data may be Present
Package source: allelematch_2.5.1.tar.gz
Windows binaries: r-devel: allelematch_2.5.1.zip, r-release: allelematch_2.5.1.zip, r-oldrel: allelematch_2.5.1.zip
OS X binaries: r-release: allelematch_2.5.1.tgz, r-oldrel: allelematch_2.5.1.tgz
Old sources: allelematch archive

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