SigTree: Identify and Visualize Significantly Responsive Branches in a Phylogenetic Tree

Provides tools to identify and visualize branches in a phylogenetic tree that are significantly responsive to some intervention, taking as primary inputs a phylogenetic tree (of class phylo) and a data frame (or matrix) of corresponding tip (OTU) labels and p-values.

Version: 1.10.6
Imports: ape, phylobase, phyext2, RColorBrewer, phyloseq, graphics, utils, stats, MASS, vegan
Published: 2017-10-02
DOI: 10.32614/CRAN.package.SigTree
Author: John R. Stevens and Todd R. Jones
Maintainer: John R. Stevens <john.r.stevens at>
License: GPL-3
NeedsCompilation: yes
Citation: SigTree citation info
Materials: NEWS
In views: Phylogenetics
CRAN checks: SigTree results


Reference manual: SigTree.pdf
Vignettes: SigTree Tutorial Vignette


Package source: SigTree_1.10.6.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): SigTree_1.10.6.tgz, r-oldrel (arm64): SigTree_1.10.6.tgz, r-release (x86_64): SigTree_1.10.6.tgz, r-oldrel (x86_64): SigTree_1.10.6.tgz
Old sources: SigTree archive


Please use the canonical form to link to this page.