CRAN Package Check Results for Package ptm

Last updated on 2021-04-22 23:49:50 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.2.2 24.17 205.04 229.21 OK
r-devel-linux-x86_64-debian-gcc 0.2.2 20.27 150.54 170.81 OK
r-devel-linux-x86_64-fedora-clang 0.2.2 284.42 OK
r-devel-linux-x86_64-fedora-gcc 0.2.2 266.42 OK
r-devel-windows-ix86+x86_64 0.2.2 47.00 302.00 349.00 OK
r-devel-windows-x86_64-gcc10-UCRT 0.2.2 OK
r-patched-linux-x86_64 0.2.2 22.16 184.15 206.31 OK
r-patched-solaris-x86 0.2.2 392.20 OK
r-release-linux-x86_64 0.2.2 22.25 184.22 206.47 ERROR
r-release-macos-x86_64 0.2.2 ERROR
r-release-windows-ix86+x86_64 0.2.2 48.00 306.00 354.00 OK
r-oldrel-macos-x86_64 0.2.2 ERROR
r-oldrel-windows-ix86+x86_64 0.2.2 46.00 262.00 308.00 OK

Additional issues

ATLAS M1mac

Check Details

Version: 0.2.2
Check: tests
Result: ERROR
     Running ‘testthat.R’ [15s/66s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(ptm)
     >
     > test_check("ptm")
     ordinary text without R code
    
     label: unnamed-chunk-1 (with options)
     List of 3
     $ out.width: chr "50px"
     $ fig.align: chr "left"
     $ echo : logi FALSE
    
     ordinary text without R code
    
     label: unnamed-chunk-2 (with options)
     List of 1
     $ echo: logi FALSE
    
     label: unnamed-chunk-3 (with options)
     List of 1
     $ echo: logi FALSE
    
     label: unnamed-chunk-4 (with options)
     List of 1
     $ echo: logi FALSE
    
     ordinary text without R code
    
     label: unnamed-chunk-5 (with options)
     List of 1
     $ echo: logi FALSE
    
    
     MUSCLE v3.8.31 by Robert C. Edgar
    
     http://www.drive5.com/muscle
     This software is donated to the public domain.
     Please cite: Edgar, R.C. Nucleic Acids Res 32(5), 1792-97.
    
     file186c78cc0308 2 seqs, max length 418, avg length 406
     906 MB(3%)00:00:00 Iter 1 33.33% K-mer dist pass 1
     906 MB(3%)00:00:00 Iter 1 100.00% K-mer dist pass 1
     906 MB(3%)00:00:00 Iter 1 33.33% K-mer dist pass 2
     906 MB(3%)00:00:00 Iter 1 100.00% K-mer dist pass 2
     906 MB(3%)00:00:00 Iter 1 100.00% Align node
     906 MB(3%)00:00:00 Iter 1 100.00% Align node
     906 MB(3%)00:00:00 Iter 1 50.00% Root alignment
     906 MB(3%)00:00:00 Iter 1 100.00% Root alignment
     906 MB(3%)00:00:00 Iter 1 100.00% Root alignment
     file186c36e0bcb8 2 seqs, max length 418, avg length 406
     919 MB(3%)00:00:00 Iter 1 33.33% K-mer dist pass 1
     919 MB(3%)00:00:00 Iter 1 100.00% K-mer dist pass 1
     919 MB(3%)00:00:00 Iter 1 33.33% K-mer dist pass 2
     919 MB(3%)00:00:00 Iter 1 100.00% K-mer dist pass 2
     919 MB(3%)00:00:00 Iter 1 100.00% Align node
     919 MB(3%)00:00:00 Iter 1 100.00% Align node
     919 MB(3%)00:00:00 Iter 1 50.00% Root alignment
     919 MB(3%)00:00:00 Iter 1 100.00% Root alignment
     919 MB(3%)00:00:00 Iter 1 100.00% Root alignment
     file186c7da3ed90 2 seqs, max length 418, avg length 406
     931 MB(3%)00:00:00 Iter 1 33.33% K-mer dist pass 1
     931 MB(3%)00:00:00 Iter 1 100.00% K-mer dist pass 1
     931 MB(3%)00:00:00 Iter 1 33.33% K-mer dist pass 2
     931 MB(3%)00:00:00 Iter 1 100.00% K-mer dist pass 2
     931 MB(3%)00:00:00 Iter 1 100.00% Align node
     931 MB(3%)00:00:00 Iter 1 100.00% Align node
     931 MB(3%)00:00:00 Iter 1 50.00% Root alignment
     931 MB(3%)00:00:00 Iter 1 100.00% Root alignment
     931 MB(3%)00:00:00 Iter 1 100.00% Root alignment
     file186c58ee0675 2 seqs, max length 418, avg length 406
     943 MB(3%)00:00:00 Iter 1 33.33% K-mer dist pass 1
     943 MB(3%)00:00:00 Iter 1 100.00% K-mer dist pass 1
     943 MB(3%)00:00:00 Iter 1 33.33% K-mer dist pass 2
     943 MB(3%)00:00:00 Iter 1 100.00% K-mer dist pass 2
     943 MB(3%)00:00:00 Iter 1 100.00% Align node
     943 MB(3%)00:00:00 Iter 1 100.00% Align node
     943 MB(3%)00:00:00 Iter 1 50.00% Root alignment
     943 MB(3%)00:00:00 Iter 1 100.00% Root alignment
     943 MB(3%)00:00:00 Iter 1 100.00% Root alignment
     file186c19101b84 2 seqs, max length 418, avg length 406
     951 MB(3%)00:00:00 Iter 1 33.33% K-mer dist pass 1
     951 MB(3%)00:00:00 Iter 1 100.00% K-mer dist pass 1
     951 MB(3%)00:00:00 Iter 1 33.33% K-mer dist pass 2
     951 MB(3%)00:00:00 Iter 1 100.00% K-mer dist pass 2
     951 MB(3%)00:00:00 Iter 1 100.00% Align node
     951 MB(3%)00:00:00 Iter 1 100.00% Align node
     951 MB(3%)00:00:00 Iter 1 50.00% Root alignment
     951 MB(3%)00:00:00 Iter 1 100.00% Root alignment
     951 MB(3%)00:00:00 Iter 1 100.00% Root alignment
     file186c27e8fed0 2 seqs, max length 476, avg length 476
     961 MB(3%)00:00:00 Iter 1 33.33% K-mer dist pass 1
     961 MB(3%)00:00:00 Iter 1 100.00% K-mer dist pass 1
     961 MB(3%)00:00:00 Iter 1 33.33% K-mer dist pass 2
     961 MB(3%)00:00:00 Iter 1 100.00% K-mer dist pass 2
     961 MB(3%)00:00:00 Iter 1 100.00% Align node
     961 MB(3%)00:00:00 Iter 1 100.00% Align node
     961 MB(3%)00:00:00 Iter 1 50.00% Root alignment
     961 MB(3%)00:00:00 Iter 1 100.00% Root alignment
     961 MB(3%)00:00:00 Iter 1 100.00% Root alignment
     ══ Skipped tests ═══════════════════════════════════════════════════════════════
     ● On CRAN (63)
    
     ══ Failed tests ════════════════════════════════════════════════════════════════
     ── Error (test_ptmScan.R:114:3): ptm.scan() works properly ─────────────────────
     Error: replacement has 2 rows, data has 1
     Backtrace:
     █
     1. ├─base::suppressWarnings(ptm.scan("Q15796")) test_ptmScan.R:114:2
     2. │ └─base::withCallingHandlers(...)
     3. └─ptm::ptm.scan("Q15796")
     4. ├─base::`$<-`(`*tmp*`, "p", value = c(NA, TRUE))
     5. └─base::`$<-.data.frame`(`*tmp*`, "p", value = c(NA, TRUE))
    
     [ FAIL 1 | WARN 7 | SKIP 63 | PASS 182 ]
     Error: Test failures
     Execution halted
Flavor: r-release-linux-x86_64

Version: 0.2.2
Check: package dependencies
Result: ERROR
    Package required but not available: ‘muscle’
    
    Package suggested but not available for checking: ‘KEGGREST’
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-release-macos-x86_64

Version: 0.2.2
Check: package dependencies
Result: ERROR
    Package required but not available: ‘muscle’
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-oldrel-macos-x86_64