CRAN Package Check Results for Package onemap

Last updated on 2020-05-24 23:47:50 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.1.3 108.74 158.10 266.84 OK --no-vignettes
r-devel-linux-x86_64-debian-gcc 2.1.3 67.96 120.50 188.46 OK --no-vignettes
r-devel-linux-x86_64-fedora-clang 2.1.3 1158.39 NOTE
r-devel-linux-x86_64-fedora-gcc 2.1.3 1050.78 NOTE
r-devel-windows-ix86+x86_64 2.1.3 231.00 1004.00 1235.00 NOTE
r-patched-linux-x86_64 2.1.3 89.95 156.88 246.83 OK --no-vignettes
r-patched-solaris-x86 2.1.3 391.30 OK --no-vignettes
r-release-linux-x86_64 2.1.3 79.02 155.98 235.00 OK --no-vignettes
r-release-osx-x86_64 2.1.3 WARN
r-release-windows-ix86+x86_64 2.1.3 301.00 992.00 1293.00 NOTE
r-oldrel-osx-x86_64 2.1.3 WARN
r-oldrel-windows-ix86+x86_64 2.1.3 213.00 949.00 1162.00 OK

Check Details

Version: 2.1.3
Check: installed package size
Result: NOTE
     installed size is 6.5Mb
     sub-directories of 1Mb or more:
     doc 1.9Mb
     libs 3.4Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64

Version: 2.1.3
Check: compiled code
Result: NOTE
    File ‘onemap/libs/onemap.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 2.1.3
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘Inbred_Based_Populations.Rmd’ using rmarkdown
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'Inbred_Based_Populations.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘Inbred_Based_Populations.Rmd’
    
    --- re-building ‘Introduction_R.Rmd’ using rmarkdown
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'Introduction_R.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘Introduction_R.Rmd’
    
    --- re-building ‘Outcrossing_Populations.Rmd’ using rmarkdown
    Read 1 item
    Read 1 item
    Read 1 item
    Read 1 item
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'Outcrossing_Populations.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘Outcrossing_Populations.Rmd’
    
    --- re-building ‘Overview.Rmd’ using rmarkdown
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'Overview.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘Overview.Rmd’
    
    SUMMARY: processing the following files failed:
     ‘Inbred_Based_Populations.Rmd’ ‘Introduction_R.Rmd’
     ‘Outcrossing_Populations.Rmd’ ‘Overview.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-release-osx-x86_64

Version: 2.1.3
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Warning: 'rgl_init' failed, running with rgl.useNULL = TRUE
Flavor: r-oldrel-osx-x86_64

Version: 2.1.3
Check: dependencies in R code
Result: NOTE
    No protocol specified
Flavor: r-oldrel-osx-x86_64

Version: 2.1.3
Check: S3 generic/method consistency
Result: WARN
    No protocol specified
    See section ‘Generic functions and methods’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-oldrel-osx-x86_64

Version: 2.1.3
Check: replacement functions
Result: WARN
    No protocol specified
    The argument of a replacement function which corresponds to the right
    hand side must be named ‘value’.
Flavor: r-oldrel-osx-x86_64

Version: 2.1.3
Check: foreign function calls
Result: NOTE
    No protocol specified
    See chapter ‘System and foreign language interfaces’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-oldrel-osx-x86_64

Version: 2.1.3
Check: R code for possible problems
Result: NOTE
    No protocol specified
Flavor: r-oldrel-osx-x86_64

Version: 2.1.3
Check: for missing documentation entries
Result: WARN
    No protocol specified
    All user-level objects in a package should have documentation entries.
    See chapter ‘Writing R documentation files’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-oldrel-osx-x86_64

Version: 2.1.3
Check: for code/documentation mismatches
Result: WARN
    No protocol specified
    No protocol specified
    No protocol specified
Flavor: r-oldrel-osx-x86_64

Version: 2.1.3
Check: Rd \usage sections
Result: NOTE
    No protocol specified
    The \usage entries for S3 methods should use the \method markup and not
    their full name.
    See chapter ‘Writing R documentation files’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-oldrel-osx-x86_64