Last updated on 2019-12-08 23:47:16 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.9.10 | 7.22 | 370.49 | 377.71 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.9.10 | 6.27 | 243.76 | 250.03 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.9.10 | 430.72 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.9.10 | 399.36 | OK | |||
| r-devel-windows-ix86+x86_64 | 0.9.10 | 17.00 | 444.00 | 461.00 | OK | |
| r-devel-windows-ix86+x86_64-gcc8 | 0.9.10 | 20.00 | 352.00 | 372.00 | OK | |
| r-patched-linux-x86_64 | 0.9.10 | 6.85 | 322.23 | 329.08 | OK | |
| r-patched-solaris-x86 | 0.9.10 | 478.30 | OK | |||
| r-release-linux-x86_64 | 0.9.10 | 6.61 | 328.00 | 334.61 | OK | |
| r-release-windows-ix86+x86_64 | 0.9.10 | 16.00 | 303.00 | 319.00 | OK | |
| r-release-osx-x86_64 | 0.9.10 | OK | ||||
| r-oldrel-windows-ix86+x86_64 | 0.9.10 | 8.00 | 307.00 | 315.00 | ERROR | |
| r-oldrel-osx-x86_64 | 0.9.10 | ERROR |
Version: 0.9.10
Check: tests
Result: ERROR
Running 'testthat.R' [235s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(basket)
>
> test_check("basket")
-- The MEM Model Call ----------------------------------------------------------
mem_exact(responses = vemu_wide1$responders, size = vemu_wide1$evaluable,
name = vemu_wide1$baskets, p0 = 0.25)
-- The Basket Summary ----------------------------------------------------------
The Null Response Rates (alternative is greater):
NSCLC CRC (vemu) CRC (vemu+cetu)
Null 0.250 0.250 0.25
Posterior Prob 0.951 0.002 0.00
Posterior Mean and Median Response Rates:
NSCLC CRC (vemu) CRC (vemu+cetu)
Mean 0.425 0.041 0.042
Median 0.422 0.032 0.033
Highest Posterior Density Interval with Coverage Probability 0.95:
NSCLC CRC (vemu) CRC (vemu+cetu)
lower 0.208 0.000 0.000
upper 0.628 0.105 0.109
Posterior Effective Sample Size:
[,1] [,2] [,3]
19.93 55.647 50.867
-- The Cluster Summary ---------------------------------------------------------
Cluster 1
"NSCLC"
Cluster 2
"CRC (vemu)" "CRC (vemu+cetu)"
The Null Response Rates (alternative is greater):
Cluster 1 Cluster 2
Null 0.250 0.250
Posterior Prob 0.951 0.001
Posterior Mean and Median Response Rates:
Cluster 1 Cluster 2
Mean 0.425 0.041
Median 0.422 0.033
Highest Posterior Density Interval with Coverage Probability 0.95:
Cluster 1 Cluster 2
Lower Bound 0.214 0.000
Upper Bound 0.631 0.107
Posterior Effective Sample Size:
Cluster 1 Cluster 2
20.28 52.91
The Null Response Rates (alternative is greater):
NSCLC CRC (vemu) CRC (vemu+cetu)
Null 0.250 0.250 0.25
Posterior Prob 0.951 0.002 0.00
Posterior Mean and Median Response Rates:
NSCLC CRC (vemu) CRC (vemu+cetu)
Mean 0.425 0.041 0.042
Median 0.422 0.032 0.033
Highest Posterior Density Interval with Coverage Probability 0.95:
NSCLC CRC (vemu) CRC (vemu+cetu)
lower 0.208 0.000 0.000
upper 0.628 0.105 0.109
Posterior Effective Sample Size:
[,1] [,2] [,3]
19.93 55.647 50.867
Cluster 1
"NSCLC"
Cluster 2
"CRC (vemu)" "CRC (vemu+cetu)"
The Null Response Rates (alternative is greater):
Cluster 1 Cluster 2
Null 0.250 0.250
Posterior Prob 0.951 0.001
Posterior Mean and Median Response Rates:
Cluster 1 Cluster 2
Mean 0.425 0.041
Median 0.422 0.033
Highest Posterior Density Interval with Coverage Probability 0.95:
Cluster 1 Cluster 2
Lower Bound 0.214 0.000
Upper Bound 0.631 0.107
Posterior Effective Sample Size:
Cluster 1 Cluster 2
20.28 52.91
-- 1. Failure: (unknown) (@test-mcmc.r#41) ------------------------------------
mcmc_res1$basket$PEP not equivalent to mcmc_ref2$PEP.
4/9 mismatches (average diff: 0.0679)
[3] 0.98 - 0.901 == 0.0791
[6] 0.97 - 0.913 == 0.0567
[7] 0.98 - 0.901 == 0.0791
[8] 0.97 - 0.913 == 0.0567
-- 2. Failure: (unknown) (@test-mcmc.r#45) ------------------------------------
mcmc_res1$basket$ESS not equivalent to mcmc_ref2$ESS.
3/3 mismatches (average diff: 2.09)
[1] 39.8 - 37.5 == 2.330
[2] 38.3 - 37.9 == 0.435
[3] 38.4 - 34.9 == 3.494
== testthat results ===========================================================
[ OK: 49 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 2 ]
1. Failure: (unknown) (@test-mcmc.r#41)
2. Failure: (unknown) (@test-mcmc.r#45)
Error: testthat unit tests failed
Execution halted
Flavor: r-oldrel-windows-ix86+x86_64
Version: 0.9.10
Check: tests
Result: ERROR
Running ‘testthat.R’ [209s/209s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
── 2. Failure: (unknown) (@test-mcmc.r#45) ────────────────────────────────────
mcmc_res1$basket$ESS not equivalent to mcmc_ref2$ESS.
3/3 mismatches (average diff: 2.09)
[1] 39.8 - 37.5 == 2.330
[2] 38.3 - 37.9 == 0.435
[3] 38.4 - 34.9 == 3.494
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 49 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 2 ]
1. Failure: (unknown) (@test-mcmc.r#41)
2. Failure: (unknown) (@test-mcmc.r#45)
Error: testthat unit tests failed
Execution halted
Flavor: r-oldrel-osx-x86_64