CRAN Package Check Results for Package basket

Last updated on 2019-12-08 23:47:16 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.9.10 7.22 370.49 377.71 OK
r-devel-linux-x86_64-debian-gcc 0.9.10 6.27 243.76 250.03 OK
r-devel-linux-x86_64-fedora-clang 0.9.10 430.72 OK
r-devel-linux-x86_64-fedora-gcc 0.9.10 399.36 OK
r-devel-windows-ix86+x86_64 0.9.10 17.00 444.00 461.00 OK
r-devel-windows-ix86+x86_64-gcc8 0.9.10 20.00 352.00 372.00 OK
r-patched-linux-x86_64 0.9.10 6.85 322.23 329.08 OK
r-patched-solaris-x86 0.9.10 478.30 OK
r-release-linux-x86_64 0.9.10 6.61 328.00 334.61 OK
r-release-windows-ix86+x86_64 0.9.10 16.00 303.00 319.00 OK
r-release-osx-x86_64 0.9.10 OK
r-oldrel-windows-ix86+x86_64 0.9.10 8.00 307.00 315.00 ERROR
r-oldrel-osx-x86_64 0.9.10 ERROR

Check Details

Version: 0.9.10
Check: tests
Result: ERROR
     Running 'testthat.R' [235s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > library(basket)
     >
     > test_check("basket")
    
     -- The MEM Model Call ----------------------------------------------------------
    
     mem_exact(responses = vemu_wide1$responders, size = vemu_wide1$evaluable,
     name = vemu_wide1$baskets, p0 = 0.25)
    
     -- The Basket Summary ----------------------------------------------------------
    
     The Null Response Rates (alternative is greater):
     NSCLC CRC (vemu) CRC (vemu+cetu)
     Null 0.250 0.250 0.25
     Posterior Prob 0.951 0.002 0.00
    
     Posterior Mean and Median Response Rates:
     NSCLC CRC (vemu) CRC (vemu+cetu)
     Mean 0.425 0.041 0.042
     Median 0.422 0.032 0.033
    
     Highest Posterior Density Interval with Coverage Probability 0.95:
     NSCLC CRC (vemu) CRC (vemu+cetu)
     lower 0.208 0.000 0.000
     upper 0.628 0.105 0.109
    
     Posterior Effective Sample Size:
     [,1] [,2] [,3]
     19.93 55.647 50.867
    
     -- The Cluster Summary ---------------------------------------------------------
    
     Cluster 1
     "NSCLC"
     Cluster 2
     "CRC (vemu)" "CRC (vemu+cetu)"
    
     The Null Response Rates (alternative is greater):
     Cluster 1 Cluster 2
     Null 0.250 0.250
     Posterior Prob 0.951 0.001
    
     Posterior Mean and Median Response Rates:
     Cluster 1 Cluster 2
     Mean 0.425 0.041
     Median 0.422 0.033
    
     Highest Posterior Density Interval with Coverage Probability 0.95:
     Cluster 1 Cluster 2
     Lower Bound 0.214 0.000
     Upper Bound 0.631 0.107
    
     Posterior Effective Sample Size:
     Cluster 1 Cluster 2
     20.28 52.91
    
    
     The Null Response Rates (alternative is greater):
     NSCLC CRC (vemu) CRC (vemu+cetu)
     Null 0.250 0.250 0.25
     Posterior Prob 0.951 0.002 0.00
    
     Posterior Mean and Median Response Rates:
     NSCLC CRC (vemu) CRC (vemu+cetu)
     Mean 0.425 0.041 0.042
     Median 0.422 0.032 0.033
    
     Highest Posterior Density Interval with Coverage Probability 0.95:
     NSCLC CRC (vemu) CRC (vemu+cetu)
     lower 0.208 0.000 0.000
     upper 0.628 0.105 0.109
    
     Posterior Effective Sample Size:
     [,1] [,2] [,3]
     19.93 55.647 50.867
    
    
     Cluster 1
     "NSCLC"
     Cluster 2
     "CRC (vemu)" "CRC (vemu+cetu)"
    
     The Null Response Rates (alternative is greater):
     Cluster 1 Cluster 2
     Null 0.250 0.250
     Posterior Prob 0.951 0.001
    
     Posterior Mean and Median Response Rates:
     Cluster 1 Cluster 2
     Mean 0.425 0.041
     Median 0.422 0.033
    
     Highest Posterior Density Interval with Coverage Probability 0.95:
     Cluster 1 Cluster 2
     Lower Bound 0.214 0.000
     Upper Bound 0.631 0.107
    
     Posterior Effective Sample Size:
     Cluster 1 Cluster 2
     20.28 52.91
    
     -- 1. Failure: (unknown) (@test-mcmc.r#41) ------------------------------------
     mcmc_res1$basket$PEP not equivalent to mcmc_ref2$PEP.
     4/9 mismatches (average diff: 0.0679)
     [3] 0.98 - 0.901 == 0.0791
     [6] 0.97 - 0.913 == 0.0567
     [7] 0.98 - 0.901 == 0.0791
     [8] 0.97 - 0.913 == 0.0567
    
     -- 2. Failure: (unknown) (@test-mcmc.r#45) ------------------------------------
     mcmc_res1$basket$ESS not equivalent to mcmc_ref2$ESS.
     3/3 mismatches (average diff: 2.09)
     [1] 39.8 - 37.5 == 2.330
     [2] 38.3 - 37.9 == 0.435
     [3] 38.4 - 34.9 == 3.494
    
     == testthat results ===========================================================
     [ OK: 49 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 2 ]
     1. Failure: (unknown) (@test-mcmc.r#41)
     2. Failure: (unknown) (@test-mcmc.r#45)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-oldrel-windows-ix86+x86_64

Version: 0.9.10
Check: tests
Result: ERROR
     Running ‘testthat.R’ [209s/209s]
    Running the tests in ‘tests/testthat.R’ failed.
    Last 13 lines of output:
    
     ── 2. Failure: (unknown) (@test-mcmc.r#45) ────────────────────────────────────
     mcmc_res1$basket$ESS not equivalent to mcmc_ref2$ESS.
     3/3 mismatches (average diff: 2.09)
     [1] 39.8 - 37.5 == 2.330
     [2] 38.3 - 37.9 == 0.435
     [3] 38.4 - 34.9 == 3.494
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 49 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 2 ]
     1. Failure: (unknown) (@test-mcmc.r#41)
     2. Failure: (unknown) (@test-mcmc.r#45)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-oldrel-osx-x86_64