CRAN Package Check Results for Package LncMod

Last updated on 2019-12-08 23:47:27 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1 6.63 70.37 77.00 NOTE
r-devel-linux-x86_64-debian-gcc 1.1 6.66 54.28 60.94 NOTE
r-devel-linux-x86_64-fedora-clang 1.1 94.76 NOTE
r-devel-linux-x86_64-fedora-gcc 1.1 89.32 NOTE
r-devel-windows-ix86+x86_64 1.1 16.00 82.00 98.00 NOTE
r-devel-windows-ix86+x86_64-gcc8 1.1 15.00 79.00 94.00 NOTE
r-patched-linux-x86_64 1.1 7.41 63.33 70.74 NOTE
r-patched-solaris-x86 1.1 126.60 NOTE
r-release-linux-x86_64 1.1 7.33 62.94 70.27 NOTE
r-release-windows-ix86+x86_64 1.1 19.00 74.00 93.00 NOTE
r-release-osx-x86_64 1.1 NOTE
r-oldrel-windows-ix86+x86_64 1.1 10.00 70.00 80.00 NOTE
r-oldrel-osx-x86_64 1.1 NOTE

Check Details

Version: 1.1
Check: R code for possible problems
Result: NOTE
    tri.app: no visible binding for global variable 'IQR'
    tri.app : infun: no visible global function definition for 'quantile'
    tri.app : infun : <anonymous>: no visible global function definition
     for 'cor'
    tri.app : infun : <anonymous>: no visible global function definition
     for 't.test'
    tri.app : infun: no visible global function definition for 'cor'
    tri.app : infun: no visible global function definition for 'p.adjust'
    tri.basic: no visible global function definition for 'quantile'
    tri.basic: no visible global function definition for 'cor.test'
    tri.basic: no visible global function definition for 'lm'
    tri.basic: no visible global function definition for 't.test'
    tri.basic: no visible global function definition for 'pdf'
    tri.basic: no visible global function definition for 'layout'
    tri.basic: no visible global function definition for 'par'
    tri.basic: no visible global function definition for 'boxplot'
    tri.basic: no visible global function definition for 'axis'
    tri.basic: no visible global function definition for 'plot'
    tri.basic: no visible global function definition for 'abline'
    tri.basic: no visible global function definition for 'points'
    tri.basic: no visible global function definition for 'dev.off'
    tri.enrich : <anonymous>: no visible global function definition for
     'phyper'
    tri.enrich: no visible global function definition for 'p.adjust'
    tri.surv: no visible global function definition for 'median'
    tri.surv: no visible global function definition for 'pdf'
    tri.surv: no visible global function definition for 'colorRampPalette'
    tri.surv: no visible global function definition for 'dev.off'
    tri.surv: no visible global function definition for 'barplot'
    tri.surv: no visible global function definition for 'axis'
    tri.surv: no visible global function definition for 'pchisq'
    tri.surv: no visible global function definition for 'plot'
    tri.surv: no visible global function definition for 'text'
    tri.surv: no visible global function definition for 'legend'
    Undefined global functions or variables:
     IQR abline axis barplot boxplot colorRampPalette cor cor.test dev.off
     layout legend lm median p.adjust par pchisq pdf phyper plot points
     quantile t.test text
    Consider adding
     importFrom("grDevices", "colorRampPalette", "dev.off", "pdf")
     importFrom("graphics", "abline", "axis", "barplot", "boxplot",
     "layout", "legend", "par", "plot", "points", "text")
     importFrom("stats", "IQR", "cor", "cor.test", "lm", "median",
     "p.adjust", "pchisq", "phyper", "quantile", "t.test")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.1
Check: for non-standard things in the check directory
Result: NOTE
    Found the following files/directories:
     'basic_1_HOTAIR_MXI1_CD58.pdf' 'basic_2_HOTAIR_MXI1_PRKCE.pdf'
     'survival_1_HOTAIR_MXI1_CD58_exp_test.pdf'
     'survival_1_HOTAIR_MXI1_CD58_exp_train.pdf'
     'survival_1_HOTAIR_MXI1_CD58_test_curve.pdf'
     'survival_1_HOTAIR_MXI1_CD58_test_score.pdf'
     'survival_1_HOTAIR_MXI1_CD58_train_curve.pdf'
     'survival_1_HOTAIR_MXI1_CD58_train_score.pdf'
     'survival_2_HOTAIR_MXI1_PRKCE_exp_test.pdf'
     'survival_2_HOTAIR_MXI1_PRKCE_exp_train.pdf'
     'survival_2_HOTAIR_MXI1_PRKCE_test_curve.pdf'
     'survival_2_HOTAIR_MXI1_PRKCE_test_score.pdf'
     'survival_2_HOTAIR_MXI1_PRKCE_train_curve.pdf'
     'survival_2_HOTAIR_MXI1_PRKCE_train_score.pdf'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc